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Vespucci


VESPUCCI is a COLOMBOS technology-based web portal for exploring and analyzing a comprehensive Vitis vinifera specific cross-platform expression compendium. This compendium was carefully constructed by collecting, homogenizing and formally annotating publicly available microarray and RNA-seq experiments from Gene Expression Omnibus (GEO), and ArrayExpress.

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MICCA


MICCA: a complete and accurate software for taxonomic profiling of metagenomic data.     For more information please visit MICCA webpage   Link PubMed

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Assist


ASSIsT is a tool for the efficient filtering of Illumina Infinium/BeadExpress based SNP markers. It allows analysis of different type of experimental population, namely Cross Pollinated (CP – F1), Back Cross (BC), F2 and collections of unrelated individuals (Germplasm). Results can be exported to different formats and therefore can be fed straight to marker-trait association … Continue reading Assist

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Phospho3D


Phospho3D is a database of three-dimensional structures of phosphorylation sites which stores information retrieved from the Phospho.ELM database and which is enriched with structural information and annotations at the residue level. The database also collects the results of a large-scale structural comparison procedure providing clues for the identification of new putative phosphorylation sites. Phospho3D 2.0 … Continue reading Phospho3D

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PEPSPOTDB


PepspotDB has been specifically designed to facilitate the storage and analysis of molecular interaction assays exploiting peptide array technology. PepspotDB is a resource for the storage, analysis and retrieval of peptide chip data.

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Superpose3D


Superpose3D is a software for local structural comparison. It runs on Windows, Mac OSX and Linux and is released under the open source GPL license. Superpose3D was developed by Pier Federico Gherardini and Gabriele Ausiello. Protein structures, similarly to sequences, can be compared either globally, to reveal distant evolutionary relationships, or locally, to highlight similarities … Continue reading Superpose3D

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PICMI 1.0


PICMI is a tool to map nucleotide and amino acid variations on genomes and on all gene isoforms.

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FIDEA 1.1


A web server designed to facilitate the functional interpretation of differential expression analysis. It is aimed at allowing experimentalists to “play with” their RNA-Seq data in an easy and at the same time exhaustive fashion within a single tool.

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DIGIT


A database of immunoglobulin variable domain sequences and related search and modelling tools

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Maistas 1.0


Maìstas is a fully automatic pipeline aimed at building and assessing three-dimensional models for alternative splicing isoforms.

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